A pinboard by
chancey macdonald

PhD Candidate, James Cook University


Shallow coral reefs are dying globally, can vulnerable fish and coral survive in deep water refuges?

Shallow coral reefs are dying globally from storm damage and increasingly warm water temperature. This puts a lot of pressure on fish that rely heavily on corals for shelter and food. My research helps answer a key question raised by ecologists, conservationists and polititions alike; can vulnerable fish and coral survive in deep water refuges?

First, my research compares how many fish and corals of different species live at different depths on coral reefs between 0m to 40m. I then look more closely at how how stable the lifestyle and health of vulnerable fish species are along that depth gradient. During many months of observations I have recorded how deep particularly vulnerable reef fish live, and also differences between depths in how much space they use, how far they move, what foods they eat, how much energy is available in the food, how they supplement diets, how much energy they put into reproduction, and what their general body condition is like. I have also shown how shallow and deep water populations respond differently to two different environmental disturbance types that drastically reduced important coral habitat and food sources.

My research shows that deep reefs are ecologically viable habitats that may offer some refuge to vulnerable reef fishes, but in many cases habitat disturbance strongly effects both shallow and deep waters.


Mesophotic depths as refuge areas for fishery-targeted species on coral reefs

Abstract: Coral reefs are subjected to unprecedented levels of disturbance with population growth and climate change combining to reduce standing coral cover and stocks of reef fishes. Most of the damage is concentrated in shallow waters (<30 m deep) where humans can comfortably operate and where physical disturbances are most disruptive to marine organisms. Yet coral reefs can extend to depths exceeding 100 m, potentially offering refuge from the threats facing shallower reefs. We deployed baited remote underwater stereo-video systems (stereo-BRUVs) at depths of 10–90 m around the southern Mariana Islands to investigate whether fish species targeted by fishing in the shallows may be accruing benefits from being at depth. We show that biomass, abundance and species richness of fishery-targeted species increased from shallow reef areas to a depth of 60 m, whereas at greater depths, a lack of live coral habitat corresponded to lower numbers of fish. The majority of targeted species were found to have distributions that ranged from shallow depths (10 m) to depths of at least 70 m, emphasising that habitat, not depth, is the limiting factor in their vertical distribution. While the gradient of abundance and biomass versus depth was steepest for predatory species, the first species usually targeted by fishing, we also found that fishery-targeted herbivores prevailed in similar biomass and species richness to 60 m. Compared to shallow marine protected areas, there was clearly greater biomass of fishery-targeted species accrued in mesophotic depths. Particularly some species typically harvested by depth-limited fishing methods (e.g., spearfishing), such as the endangered humphead wrasse Cheilinus undulatus, were found in greater abundance on deeper reefs. We conclude that mesophotic depths provide essential fish habitat and refuge for fishery-targeted species, representing crucial zones for fishery management and research into the resilience of disturbed coral reef ecosystems.

Pub.: 11 Dec '15, Pinned: 28 Jul '17

When depth is no refuge: cumulative thermal stress increases with depth in Bocas del Toro, Panama

Abstract: Coral reefs are increasingly affected by high-temperature stress events and associated bleaching. Monitoring and predicting these events have largely utilized sea surface temperature data, due to the convenience of using large-scale remotely sensed satellite measurements. However, coral bleaching has been observed to vary in severity throughout the water column, and variations in coral thermal stress across depths have not yet been well investigated. In this study, in situ water temperature data from 1999 to 2011 from three depths were used to calculate thermal stress on a coral reef in Bahia Almirante, Bocas del Toro, Panama, which was compared to satellite surface temperature data and thermal stress calculations for the same area and time period from the National Oceanic and Atmospheric Administration Coral Reef Watch Satellite Bleaching Alert system. The results show similar total cumulative annual thermal stress for both the surface and depth-stratified data, but with a striking difference in the distribution of that stress among the depth strata during different high-temperature events, with the greatest thermal stress unusually recorded at the deepest measured depth during the most severe bleaching event in 2005. Temperature records indicate that a strong density-driven temperature inversion may have formed in this location in that year, contributing to the persistence and intensity of bleaching disturbance at depth. These results indicate that depth may not provide a stress refuge from high water temperature events in some situations, and in this case, the water properties at depth appear to have contributed to greater coral bleaching at depth compared to near-surface locations. This case study demonstrates the importance of incorporating depth-stratified temperature monitoring and small-scale oceanographic and hydrologic data for understanding and predicting local reef responses to elevated water temperature events.

Pub.: 18 Sep '13, Pinned: 28 Jul '17

Depth refuge and the impacts of SCUBA spearfishing on coral reef fishes.

Abstract: In recent decades, spearfishing with SCUBA has emerged as an efficient method for targeting reef fish in deeper waters. However, deeper waters are increasingly recognised as a potential source of refuge that may help sustain fishery resources. We used a combination of historical catch data over a 20-year time period and fishery-independent surveys to investigate the effects of SCUBA spearfishing on coral reef fish populations in the southern Mariana Islands. Two jurisdictions were studied; Guam, where SCUBA spearfishing is practiced, and the nearby Commonwealth of Northern Mariana Islands (CNMI), where SCUBA spearfishing has been banned since 2003. Fishery-independent data were collected using baited remote underwater stereo-video systems (stereo-BRUVs) stratified by depth, marine protected area status and jurisdiction. Herbivores (primary consumers) dominated spearfishing catches, with parrotfish (scarines) and surgeonfish/unicornfish (acanthurids) the main groups harvested. However, the large, endangered humphead wrasse (Cheilinus undulatus) was the main species by weight landed by SCUBA spearfishers. SCUBA spearfishing was associated with declining size of scarines over time and catches shifting from a dominance of large parrotfishes to a mixed assemblage with increasing proportions of acanthurids. Comparisons between Guam and the nearby CNMI revealed differences in the assemblage of fished species and also greater size of scarines and acanthurids in deep water where SCUBA fishing is banned. These results suggest that SCUBA spearfishing impacts reef fish populations and that the restriction of this fishing method will ensure refuge for fish populations in deeper waters. We recommend a ban on SCUBA spearfishing to preserve or aid the recovery of large, functionally important coral reef species and to improve the sustainability of coral reef fisheries.

Pub.: 26 Mar '14, Pinned: 28 Jul '17