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Amino Acid Side Chains Buried Along Intersubunit Interfaces in a Viral Capsid Preserve Low Mechanical Stiffness Associated to Virus Infectivity.

Research paper by Pablo Jose P PJ Carrillo, Maria M Medrano, Alejandro A Valbuena, Alicia A Rodríguez-Huete, Milagros M Castellanos, Rebeca R Pérez, Mauricio G MG Mateu

Indexed on: 25 Jan '17Published on: 25 Jan '17Published in: ACS Nano



Abstract

Single-molecule experimental techniques and theoretical approaches are revealing that important aspects of virus biology can be understood in biomechanical terms at the nanoscale. A detailed knowledge of the relationship in virus capsids between small structural changes caused by single point mutations, and changes in mechanical properties may provide further physics-based insights into virus function; it may also facilitate the engineering of viral nanoparticles with improved mechanical behavior. Here we used the minute virus of mice to undertake a systematic experimental study on the contribution to capsid stiffness of amino acid side chains at interprotein interfaces and the specific noncovalent interactions they establish. Selected side chains were individually truncated by introducing point mutations to alanine, and the effects on local and global capsid stiffness were determined using atomic force microscopy. The results revealed that, in the natural virus capsid, multiple, mostly hydrophobic side chains buried along the interfaces between subunits preserve a comparatively low stiffness of most (S2 and S3) regions. Virtually no point mutation tested substantially reduced stiffness, while most mutations increased stiffness of S2/S3 regions. This stiffening was invariably associated to reduced virus yields during cell infection. The experimental evidence suggests that a comparatively low stiffness at S3/S2 capsid regions may have been biologically selected because it facilitates capsid assembly, increasing infectious virus yields. This study demonstrated also that knowledge of individual amino acid side chains and biological pressures that determine the physical behavior of a protein nanoparticle may be used for engineering its mechanical properties.